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1

Microtubule instability driven by longitudinal and lateral strain propagation

Igaev, Maxim, GrubmÃ¼ller, Helmut, Haliloglu, Turkan

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 2.30 MB

2020

2

Conformational dynamics of chymotrypsin inhibitor 2 by coarse-grained simulations

Neşe Kurt, Türkan Haliloğlu

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 412 KB

english, 1999

3

Structure-based analysis of protein dynamics: Comparison of theoretical results for hen lysozyme with X-ray diffraction and NMR relaxation data

Turkan Haliloglu, Ivet Bahar

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 367 KB

english, 1999

4

Simulations of rotational isomeric state models for poly(propylene) melts on a high coordination lattice

Türkan Haliloglu, Junhan Cho, Wayne L. Mattice

Journal:

Macromolecular Theory and Simulations

Year:

1998

Language:

english

File:

PDF, 502 KB

english, 1998

5

Use of residual dipolar couplings as restraints in ab initio protein structure prediction

Turkan Haliloglu, Andrzej Kolinski, Jeffrey Skolnick

Journal:

Year:

2003

Language:

english

File:

PDF, 1.74 MB

english, 2003

6

Conformational transitions of end-adsorbed triblock copolymers in a nonselective solvent

Turkan Haliloglu, Wayne L. Mattice

Journal:

Macromolecular Theory and Simulations

Year:

1997

Language:

english

File:

PDF, 510 KB

english, 1997

7

Monte Carlo lattice simulation of the interchange of chains between micelles of diblock copolymers

Türkan Haliloǧlu, Wayne L. Mattice

Journal:

Chemical Engineering Science

Year:

1994

Language:

english

File:

PDF, 658 KB

english, 1994

8

Unfolding events of Chymotrypsin Inhibitor 2 (CI2) revealed by Monte Carlo (MC) simulations and their consistency from structure-based analysis of conformations

S.Banu Ozkan, Gul Safak Dalgýn, Turkan Haliloglu

Journal:

Year:

2004

Language:

english

File:

PDF, 1.84 MB

english, 2004

9

Molecular dynamics simulations on constraint metal binding peptides

Nigar Kantarci, Candan Tamerler, Mehmet Sarikaya, Turkan Haliloglu, Pemra Doruker

Journal:

Year:

2005

Language:

english

File:

PDF, 265 KB

english, 2005

10

Distribution of cooperative interactions in barnase at different time windows by coarse-grained simulations

Nese Kurt, Türkan Haliloglu

Journal:

Year:

2002

Language:

english

File:

PDF, 228 KB

english, 2002

11

Machine learning integration for predicting the effect of single amino acid substitutions on protein stability

Ayşegül Özen, Mehmet Gönen, Ethem Alpaydın, Türkan Haliloğlu

Journal:

BMC Structural Biology

Year:

2009

Language:

english

File:

PDF, 1.32 MB

english, 2009

12

Cooperative fluctuations of unliganded and substrate-bound HIV-1 protease: A structure-based analysis on a variety of conformations from crystallography and molecular dynamics simulations

Nese Kurt, Walter R.P. Scott, Celia A. Schiffer, Turkan Haliloglu

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 994 KB

english, 2003

13

Substrate specificity in HIV-1 protease by a biased sequence search method

Nevra Ozer, Turkan Haliloglu, Celia A. Schiffer

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 222 KB

english, 2006

14

HingeProt: Automated prediction of hinges in protein structures

Ugur Emekli, Dina Schneidman-Duhovny, Haim J. Wolfson, Ruth Nussinov, Turkan Haliloglu

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 326 KB

english, 2008

15

Orientational mobility in uniaxially deformed polymer chains: a Brownian dynamics simulation study

Turkan Haliloglu, Burak Erman, Ivet Bahar

Journal:

Year:

1993

Language:

english

File:

PDF, 228 KB

english, 1993

16

Association of putative concave protein-binding sites with the fluctuation behavior of residues

Asli Ertekin, Ruth Nussinov, Turkan Haliloglu

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 872 KB

english, 2006

17

Dynamic Allostery: Linkers Are Not Merely Flexible

Buyong Ma, Chung-Jung Tsai, Türkan Haliloğlu, Ruth Nussinov

Journal:

Year:

2011

Language:

english

File:

PDF, 689 KB

english, 2011

18

Extreme Entropy–Enthalpy Compensation in a Drug-Resistant Variant of HIV-1 Protease

King, Nancy M., Prabu-Jeyabalan, Moses, Bandaranayake, Rajintha M., Nalam, Madhavi N. L., Nalivaika, Ellen A., Özen, Ayşegül, Haliloǧlu, Türkan, Yılmaz, Neşe Kurt, Schiffer, Celia A.

Journal:

ACS Chemical Biology

Year:

2012

Language:

english

File:

PDF, 4.70 MB

english, 2012

19

Alternative Allosteric Mechanisms Can Regulate the Substrate and E2 in SUMO Conjugation

Ezgi Karaca, Melda Tozluoğlu, Ruth Nussinov, Türkan Haliloğlu

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.87 MB

english, 2011

20

Dynamics of Preferential Substrate Recognition in HIV-1 Protease: Redefining the Substrate Envelope

Ayşegül Özen, Türkan Haliloğlu, Celia A. Schiffer

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 3.22 MB

english, 2011

21

How Does KCNE1 Regulate the Kv7.1 Potassium Channel? Model-Structure, Mutations, and Dynamics of the Kv7.1-KCNE1 Complex

Yana Gofman, Simona Shats, Bernard Attali, Turkan Haliloglu, Nir Ben-Tal

Journal:

Year:

2012

Language:

english

File:

PDF, 1.77 MB

english, 2012

22

Gaussian Dynamics of Folded Proteins

Haliloglu, Turkan, Bahar, Ivet, Erman, Burak

Journal:

Physical Review Letters

Year:

1997

Language:

english

File:

PDF, 129 KB

english, 1997

23

Structure-Based Prediction of Potential Binding and Nonbinding Peptides to HIV-1 Protease

Kurt, Nese, Haliloglu, Turkan, Schiffer, Celia A.

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 290 KB

english, 2003

24

Interactions of Hydrophobic Peptides with Lipid Bilayers: Monte Carlo Simulations with M2δ

Kessel, Amit, Shental-Bechor, Dalit, Haliloglu, Turkan, Ben-Tal, Nir

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 321 KB

english, 2003

25

Interactions of the M2δ Segment of the Acetylcholine Receptor with Lipid Bilayers: A Continuum-Solvent Model Study

Kessel, Amit, Haliloglu, Turkan, Ben-Tal, Nir

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 341 KB

english, 2003

26

Independent and Cooperative Motions of the Kv1.2 Channel: Voltage Sensing and Gating

Yeheskel, Adva, Haliloglu, Turkan, Ben-Tal, Nir

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 1.01 MB

english, 2010

27

Rationale for More Diverse Inhibitors in Competition with Substrates in HIV-1 Protease

Ozer, Nevra, Schiffer, Celia A., Haliloglu, Turkan

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 1.61 MB

english, 2010

28

Monte Carlo Studies of Folding, Dynamics, and Stability in α-Helices

Shental-Bechor, Dalit, Kirca, Safak, Ben-Tal, Nir, Haliloglu, Turkan

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 228 KB

english, 2005

29

How Similar Are Protein Folding and Protein Binding Nuclei? Examination of Vibrational Motions of Energy Hot Spots and Conserved Residues

Haliloglu, Turkan, Keskin, Ozlem, Ma, Buyong, Nussinov, Ruth

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 223 KB

english, 2005

30

Cooperative Fluctuations Point to the Dimerization Interface of P53 Core Domain

Kantarci, Nigar, Doruker, Pemra, Haliloglu, Turkan

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 484 KB

english, 2006

31

Interactions of Cationic-Hydrophobic Peptides with Lipid Bilayers: A Monte Carlo Simulation Method

Shental-Bechor, Dalit, Haliloglu, Turkan, Ben-Tal, Nir

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 396 KB

english, 2007

32

Conformational Transition Pathways Explored by Monte Carlo Simulation Integrated with Collective Modes

Kantarci-Carsibasi, Nigar, Haliloglu, Turkan, Doruker, Pemra

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 593 KB

english, 2008

33

Analysis of Correlations between Energy and Residue Fluctuations in Native Proteins and Determination of Specific Sites for Binding

Haliloglu, Turkan, Erman, Burak

Journal:

Physical Review Letters

Year:

2009

Language:

english

File:

PDF, 236 KB

english, 2009

34

Prediction of Binding Sites in Receptor-Ligand Complexes with the Gaussian Network Model

Haliloglu, Turkan, Seyrek, Emek, Erman, Burak

Journal:

Physical Review Letters

Year:

2008

Language:

english

File:

PDF, 324 KB

english, 2008

35

HIV-1 Protease and Substrate Coevolution Validates the Substrate Envelope As the Substrate Recognition Pattern

Özen, Ayşegül, Haliloğlu, Türkan, Schiffer, Celia A.

Journal:

Journal of Chemical Theory and Computation

Year:

2012

Language:

english

File:

PDF, 5.60 MB

english, 2012

36

Segmental orientation in uniaxially deformed networks: a higher order approximation for finite chains and large deformations

Erman, Burak, Haliloglu, Turkan, Bahar, Ivet, Mark, James E.

Journal:

Year:

1991

Language:

english

File:

PDF, 654 KB

english, 1991

37

Using Molecular Dynamics to Investigate Substrate Recognition and Co-evolution in HIV-1 Protease

Ozen, Aysegul, Haliloglu, Turkan, Schiffer, Celia A.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 35 KB

english, 2009

38

Monte-Carlo Simulations of Peptide-Membrane Interactions: Web-Server

Gofman, Yana, Haliloglu, Turkan, Ben-Tal, Nir

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 62 KB

english, 2010

39

A Comprehensive Protein Interaction Network of Calcium Triggered Mechanisms in S. cerevisiae

Tiveci Delikanli, Senem, Haliloğlu, Türkan, Ülgen, Kutlu ÖZERGİN

Journal:

New Biotechnology

Year:

2012

Language:

english

File:

PDF, 59 KB

english, 2012

40

Human Copper Transporter 1: Model-Structure, Function and Motion

Schushan, Maya, Barkan, Yariv, Haliloglu, Turkan, Ben-Tal, Nir

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 43 KB

english, 2010

41

Features of Large Hinge-Bending Conformational Transitions. Prediction of Closed Structure from Open State

Uyar, Arzu, Kantarci-Carsibasi, Nigar, Haliloglu, Turkan, Doruker, Pemra

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 1.74 MB

english, 2014

42

Relative Contributions of Coupled Rotations and Small-Amplitude Torsions to Conformational Relaxation in Polymers

Haliloglu, Turkan, Bahar, Ivet, Erman, Burak, Mattice, Wayne L.

Journal:

Year:

1996

Language:

english

File:

PDF, 266 KB

english, 1996

43

Mechanisms of the Exchange of Diblock Copolymers between Micelles at Dynamic Equilibrium

Haliloǧlu, Türkan, Bahar, Ivet, Erman, Burak, Mattice, Wayne L.

Journal:

Year:

1996

Language:

english

File:

PDF, 286 KB

english, 1996

44

Analysis of orientation autocorrelation and cross-correlation functions for polyethylene in the inclusion complex with perhydrotriphenylene

Haliloglu, Turkan, Mattice, Wayne L.

Journal:

Year:

1993

Language:

english

File:

PDF, 673 KB

english, 1993

45

Mobility of Free Ends and Junction Points as a Lamellar Block Copolymer

Haliloglu, Turkan, Balaji, R., Mattice, Wayne L.

Journal:

Year:

1994

Language:

english

File:

PDF, 1.20 MB

english, 1994

46

Role of Structural Heterogeneities on Segmental Orientation in Deformed Chains: Application to Alternating Copolymers

Bahar, Ivet, Erman, Burak, Haliloglu, Turkan

Journal:

Year:

1994

Language:

english

File:

PDF, 872 KB

english, 1994

47

The Transmembrane Helix Tilt May Be Determined by the Balance between Precession Entropy and Lipid Perturbation

Gofman, Yana, Haliloglu, Turkan, Ben-Tal, Nir

Journal:

Journal of Chemical Theory and Computation

Year:

2012

Language:

english

File:

PDF, 1.19 MB

english, 2012

48

Effect of Vinyl Content on Self-Diffusion in Polybutadiene Melts

Jang, Jee Hwan, Haliloglu, Türkan, von Meerwall, Ernst D., Mattice, Wayne L.

Journal:

Year:

2000

Language:

english

File:

PDF, 105 KB

english, 2000

49

Conformational Dynamics of Subtilisin-Chymotrypsin Inhibitor 2 Complex by Coarse-Grained Simulations

Kurt, Neşe, Haliloğlu, Türkan

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2001

Language:

english

File:

PDF, 447 KB

english, 2001

50

[IEEE 2009 14th National Biomedical Engineering Meeting - Izmir, Turkey (2009.05.20-2009.05.22)] 2009 14th National Biomedical Engineering Meeting - Reconstruction of Wnt/Calcium signaling pathway in C. elegans

Alazi, Feras, Haliloglu, Turkan, Ulgen, Kutlu O.

Year:

2009

Language:

turkish

File:

PDF, 425 KB

turkish, 2009

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